This chapter from The Codex of the Endangered Species Act, Volume II: The Next Fifty Years describes how genetic information is used to inform decision-making for the Endangered Species Act. In one section of this chapter (page 4 of the PDF, page 162 of the book), the use of genomics to differentiate between subspecies of willow flycatcher (Empidonax traillii) is described.

This article describes how researchers discovered that southwestern willow flycatchers in southern California have evolved in response to climate change. Southwestern willow flycatcher (SWFL) populations are threatened by climate change and habitat loss. By sequencing DNA from historical SWFL samples and comparing these to modern samples, researchers determined that modern SWFL were more likely to have beneficial genes that help them cope with changing climate.

An Integrated Pest Management Plan for the Bill Williams River National Wildlife Refuge. This plan outlines the biological degradation of native riparian forest habitat along the Lower Colorado River and the invasive species management actions needed to protect and restore riparian forests and marshlands of the Bill Williams River. 

DeRango, B., 2023. Integrated Pest Management Plan Bill Williams River National Wildlife Refuge.

A look at the evolutionary response to climate change in the endangered southwestern willow flycatcher (Empidonax traillii extimus) using whole-genome comparisons between historic and modern specimens from California. While introgression led genomes of neighboring E. traillii extimus populations (California and Arizona) to become more similar, the specific loci linked to climate shifted in a way consistent with climate adaptation rather than becoming more similar to those of neighboring populations.

A look into the use of invasive Tamarix (saltcedar, tamarisk) as habitat for birds in the southwestern United States and its implications for Tamarix control. While Tamarix habitat supports fewer birds than native habitat, data from Arizona Breeding Bird Atlas and Birds of North America demonstrate that 49 bird species use Tamarix as breeding habitat. The use and quality of Tamarix as bird habitat varies depending on geographic location and species and few studies have quantified the effects of Tamarix habitat on bird survivorship and productivity.

From the abstract:

An understanding of trait-environment relationships is particularly important in the case of invasive species which may alter abiotic conditions and available resources. This study is the first to measure the functional response of riparian plant communities to biocontrol of an invasive species.

Final report on population surveys for SWFL and YBCU in 2018 and 2019, apply existing habitat models to illustrate and predict past, current, and future habitat suitabilities for these two species, and update and standardize classification and mapping of riparian vegetation to reflect recent conditions along the lower 50 miles of the Santa Clara River.

A look at several case studies from conservation practitioners and ornithological social scientists to highlight six core principles of translational ecology - an intentional approach in which researchers and practitioners from multiple disciplines collaborate on conservation management. The authors demonstrate how implementing collaboration, engagement, communication, commitment, process, and decision-framing can lead to improved conservation decision-making and delivery of outcomes applicable to specific management decisions.

Development of a novel repellant compound for the potential management of the northern tamarisk beetle (Diorhabda carinulata). Repellant has been shown to be effective on reproductive adults and alter the behaviors of 1st and 2nd instar larvae. Continued development and field deployment of this repellent compound may provide a new tool for the management of D. carinulata.

The northern tamarisk beetle Diorhabda carinulata (Desbrochers) was approved for release in the United States for classical biological control of a complex of invasive saltcedar species and their hybrids (Tamarix spp.). An aggregation pheromone used by D. carinulata to locate conspecifics is fundamental to colonization and reproductive success.